au.csiro.ontology.importer.rf2

Class RF2Importer.OntologyBuilder

java.lang.Object

au.csiro.ontology.importer.rf2.RF2Importer.OntologyBuilder

Enclosing class:

RF2Importer

protected class RF2Importer.OntologyBuilder
extends Object

Class that knows how to build an Ontology from a set of RF2 files.

Author:

Alejandro Metke

Field Summary

Fields

Modifier and Type	Field and Description
protected Map<String,List<String[]>>	cdsMap
protected String	conceptDefinedId
protected String	conceptModelAttId
protected String	definitionId
protected String	equalsOperatorId
protected au.csiro.ontology.importer.rf2.RF2Importer.Factory	factory
protected Map<String,String>	featureType
protected String	fsnId
protected String	isAId
protected boolean	isNNF
protected String	lateralityId
protected String	measurementTypeFloat
protected String	measurementTypeInt
protected Set<String>	neverGroupedIds
protected String	neverGroupedIdsString
protected String	rightIdentityIds
protected String	roleGroupId
protected String	rootModuleId
protected String	rootModuleVersion
protected String	someId
protected String	synonymId
protected String	unitRoleId
protected VersionRows	vr

Constructor Summary

Constructors

Constructor and Description
OntologyBuilder(VersionRows vr, String rootModuleId, String rootModuleVersion, Map<String,String> metadata)

Method Summary

Modifier and Type	Method and Description
protected Ontology	build(IProgressMonitor monitor) Builds the Ontology stated form from the RF2 input files.
protected void	initDefaultNeverGroupedIds() Initialise the never-grouped ObjectProperties to those explicitly specified in external configuration.
protected boolean	isActive(String active)
protected boolean	isDefining(String characteristicType)
protected void	mapDatatype(List<Concept> conjs, String[] datatype)
protected void	mapRoles(List<Concept> conjs, Set<RF2Importer.RoleValuePair> rvs)
protected void	populateInactiveChildren(String src, String tgt, Map<String,Set<String>> inactiveChildren)
protected void	populateInactiveParent(String src, String tgt, Map<String,Set<String>> inactiveParents)
protected void	populateInactiveRels(String comp, String src, String role, String tgt, String group, Map<String,List<String[]>> inactiveRels)
protected void	populateInactiveRoleDef(String code, String rightId, String parentRole, Map<String,Map<String,String>> inactiveRoles)
protected void	populateInactiveRoles(Set<String> roles, String parentSCTID, String version, String rightIdentityIds, Map<String,Set<String>> inactiveChildren, Map<String,Map<String,String>> inactiveRoles)
protected void	processAxiomRows(Collection<Axiom> statedAxioms, IProgressMonitor monitor)
protected Concept	resolveFiller(Concept value, String compId)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

vr

protected final VersionRows vr

rootModuleId

protected final String rootModuleId

rootModuleVersion

protected final String rootModuleVersion

conceptDefinedId

protected final String conceptDefinedId

someId

protected final String someId

isAId

protected final String isAId

lateralityId

protected String lateralityId

conceptModelAttId

protected final String conceptModelAttId

neverGroupedIdsString

protected final String neverGroupedIdsString

fsnId

protected final String fsnId

synonymId

protected final String synonymId

definitionId

protected final String definitionId

rightIdentityIds

protected final String rightIdentityIds

roleGroupId

protected final String roleGroupId

measurementTypeInt

protected final String measurementTypeInt

measurementTypeFloat

protected final String measurementTypeFloat

equalsOperatorId

protected final String equalsOperatorId

unitRoleId

protected final String unitRoleId

isNNF

protected final boolean isNNF

neverGroupedIds

protected final Set<String> neverGroupedIds

factory

protected final au.csiro.ontology.importer.rf2.RF2Importer.Factory factory

featureType

protected final Map<String,String> featureType

cdsMap

protected final Map<String,List<String[]>> cdsMap

Constructor Detail

OntologyBuilder

public OntologyBuilder(VersionRows vr,
                       String rootModuleId,
                       String rootModuleVersion,
                       Map<String,String> metadata)

Method Detail

initDefaultNeverGroupedIds

protected void initDefaultNeverGroupedIds()

Initialise the never-grouped ObjectProperties to those explicitly specified in external configuration. Normally this is not needed as the MRCM provides this information.

build

protected Ontology build(IProgressMonitor monitor)
                  throws URISyntaxException

Builds the Ontology stated form from the RF2 input files.

populates #primitive map from Concepts file processes defining stated relationships mixes in data property information from Concrete Domains refsets creates RoleIncludes from the conceptModelAttrId (and rightIdentitiy metadata)

Parameters:

monitor -

Returns:

Throws:

URISyntaxException

processAxiomRows

protected void processAxiomRows(Collection<Axiom> statedAxioms,
                                IProgressMonitor monitor)

isActive

protected boolean isActive(String active)

isDefining

protected boolean isDefining(String characteristicType)

mapRoles

protected void mapRoles(List<Concept> conjs,
                        Set<RF2Importer.RoleValuePair> rvs)

resolveFiller

protected Concept resolveFiller(Concept value,
                                String compId)

mapDatatype

protected void mapDatatype(List<Concept> conjs,
                           String[] datatype)

populateInactiveRels

protected void populateInactiveRels(String comp,
                                    String src,
                                    String role,
                                    String tgt,
                                    String group,
                                    Map<String,List<String[]>> inactiveRels)

populateInactiveParent

protected void populateInactiveParent(String src,
                                      String tgt,
                                      Map<String,Set<String>> inactiveParents)

populateInactiveChildren

protected void populateInactiveChildren(String src,
                                        String tgt,
                                        Map<String,Set<String>> inactiveChildren)

populateInactiveRoles

protected void populateInactiveRoles(Set<String> roles,
                                     String parentSCTID,
                                     String version,
                                     String rightIdentityIds,
                                     Map<String,Set<String>> inactiveChildren,
                                     Map<String,Map<String,String>> inactiveRoles)

populateInactiveRoleDef

protected void populateInactiveRoleDef(String code,
                                       String rightId,
                                       String parentRole,
                                       Map<String,Map<String,String>> inactiveRoles)